Principal Component Analysis (PCA) employs an eigenvalue-eigenvector analysis to extract kinetic information from linear sensitivities calculated for species of a reacting system [4], [5]. It studies the effect on the calculated behavior of a reaction mechanism brought about by a variation in the rate coefficients. The effect is most sensitive to changes in the rate coefficients along the principle axis that corresponds to the largest eigenvalue of the sensitivity matrix and is least sensitive to changes along the axis that corresponds to the smallest eigenvalue. Therefore reactions in the principal components with small eigenvalues can be dropped.
Ansys Chemkin calculates the normalized linear sensitivities  where 
 is the mass fraction of the 
-th species and 
 is the reaction rate constant of the j-th reaction. Let us denote
          
 as the sensitivity matrix of the reaction mechanism where 
. Let us assign 
 and denote 
 for the nominal case. The effect on the calculated behavior of a reaction
        mechanism brought about by a variation in the rate constants 
 can be expressed as
| (3–13) | 
Using the Taylor series expansion, we can get an approximation of  as
| (3–14) | 
where  is the gradient vector of 
 such that 
, and 
 is the Hessian matrix of 
 such that 
. Because 
 and 
,
| (3–15) | 
The Hessian matrix  can be expressed in terms of the sensitivity matrix 
 as
| (3–16) | 
where  is the matrix of second derivatives of species concentrations regarding
        the rate constants, 
 [5]. Using the Gauss
        approximation, we can ignore the second derivatives, 
, and the effect on the calculated behavior of a reaction mechanism by
        variations in the rate constants can be expressed in terms of the sensitivity matrix of the
        reaction mechanism as
| (3–17) | 
We can perform an eigenvalue-eigenvector decomposition of the symmetric matrix
          ,
| (3–18) | 
where  is a diagonal matrix formed by the eigenvalues 
 of 
 and
          
 is the matrix of normed eigenvectors 
 of 
 such that 
 for each 
. We can further denote principal components of the matrix 
 as
          
, then 
 can be expressed in terms of the principal components as
| (3–19) | 
where . This expression informs us that the effect on the calculated behavior of
        a reaction mechanism is approximately the sum of the variations in the rate constants along
        each principle axis denoted by 
. This shows that the behavior is most sensitive to variations in the rate
        constants along the principle axis corresponding to the largest eigenvalue of the
        sensitivity matrix and is least sensitive to variations along the axis corresponding to the
        smallest eigenvalue. Therefore reactions in the principal components with small eigenvalues
        can be dropped since they contribute very little to the overall effect. Once reactions have
        been removed, the Reaction Workbench implementation will automatically remove species that
        are no longer required due to absence of participation in any reaction.